The Flex Builder installer provides the following two configuration options:
Plug-in configuration This configuration is for users who already use the Eclipse workbench, who want to add the Flex Builder plug-ins to their toolkit of Eclipse plug-ins (for example, someone who also uses Eclipse to develop Java applications). Because Eclipse is an open, extensible platform, hundreds of plug-ins are available for many different development purposes.
Stand-alone configuration This configuration is a customized packaging of Eclipse and the Flex Builder plug-ins created specifically for developing Flex and ActionScript applications. The user interface of the stand-alone configuration is more tightly integrated than in the plug-in configuration, which eliminates much of the potential confusion that the open, multipurpose plug-in configuration might create. The stand-alone configuration is ideal for new users and users who intend to develop only Flex and ActionScript applications.
If you aren't sure which configuration to use, follow these guidelines:
Both configurations provide the same functionality and you select the configuration you want when installing Flex Builder.